Some popular links to explore:

Genomics

NCBI BLAST Sites

NCBI BLAST Search. Query sequences in the nr, EST, etc databases
BLAST with Unfinished Microbial Genomes. Query sequences from the microbial genomes projects currently underway
BLAST Retrieve Data. Retrieve the results of a previously submitted BLAST search
BLAST Frequently Asked Questions (FAQ). Questions and answers about BLAST


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Useful Tools, Special Databases and Servers

Local P450/carrier BLAST Server . Query human and mouse mitochondrial carrier sequences and P450s
Quick Protein translator. Molecular Biology Shortcuts translator
The Protein Machine. EBI protein translator
Do-It-Yourself Wu-Blast. For blasting your own set of FASTA formatted sequences
Blast server at DDBJ in Japan . For blasting when NCBI is busy
Mitochondrial carrier page. Dr. Nelsons carrier page
P450 Homepage page. Dr. Nelsons Cytochrome P450 page
BLAST Ciona intestinalis cDNAs at Kyoto. Ciona (a primitive chordate) EST project
BLAST Ciona at JGI. Ciona Genome Project at the Joint Genome Institute
BLAST Fugu at JGI. Fugu Genome Project at the Joint Genome Institute
BLAST Fugu/Zebrafish at MRC HGMP. Fugu and Zebrafish Server at the UK Human Genome Mapping Project Resource Center
BLAST Dicty at Jena. Dictyostelium Genome Project at Jena, Germany
BLAST Dicty at Baylor. Dictyostelium Genome Project at Baylor College of Medicine
BLAST Dicty at SDSC. Dictyostelium Genome Project Blast server at San Diego Supercomputer Center


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Microbial genome sequencing projects and analysis

TIGR. list of complete microbial genomes
TIGR. list of microbial genomes underway
ERGO Home Page. Ergo is a fully integrated annotation and sequence analysis website for microbial genomes
GenProtEC: E. coli Genome and Proteome Database.


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DNA analysis software

Phred/Phrap/Consed Package. Phrap is a basecalling program, phred is a sequence assembler, and consed is a graphical viewing tool.
Documentation for Phred. Documentation for the sequence assembler.
PipMaker. PipMaker allows genome on genome comaprisons
TIGR. Software for DNA assembly and analysis
Sanger Center. software for DNA assembly and analysis
Staden Package Home Page.
Ensembl Genome Server. A collaboration between Sanger and EBI to develop genome analysis software tools.
EMBOSS: The Applications. EMBOSS is a free software alternative to GCG
Molecular Linux. Linux software for DNA and protein analysis
Download of Macintosh Software for Molecular biology. Many freeware and shareware DNA analysis tools for the Mac
Pedro's BioMolecular Research Tools. A powerful and complete list of software and links. Many are run through your web browser


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Genomics associated databases

Official REBASE Homepage. This restriction enzyme database contains all known restriction enzymes. Available in a variety of formats for your favorite software.
Codon Usage Database. Every genome has a codon usage table and this database has them all. Culled from DDJB
Vector database in alphabetical order. A database of vector sequences and information

Journals

Welcome to PubMed. The first place to look for an article
MEDLINE. Journals With Links to Publisher Web Sites. Now you don't have to go to the library
Bioinformatics. The bioinformatics journal
BioMedNet Home. A variety of biological and computer related information.


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Misc

SeqWeb Sequence Analysis. Local sequence analysis tools (UT Memphis only, login required)
ASM Microbial Genomes General Information.
Church Lab at Harvard. Information on all the -omes: Genome, Biome, Transcriptome, Proteome, and Physiome.