TBLASTN 2.0a19MP-WashU [14-Jul-1998] [Build linux-x86 18:51:45 30-Jul-1998] Reference: Gish, Warren (1994-1997). unpublished. Altschul, Stephen F., Warren Gish, Webb Miller, Eugene W. Myers, and David J. Lipman (1990). Basic local alignment search tool. J. Mol. Biol. 215:403-10. Notice: statistical significance is estimated under the assumption that the equivalent of one complete reading frame of the database codes for protein and that significant alignments will involve only coding reading frames. Query= 3_CYP1B1_NM_000104 (543 letters) Database: /seqs/databases/ciona/ciona_23.seq 100,000 sequences; 78,002,675 total letters. Searching....10....20....30....40....50....60....70....80....90....100% done Smallest Sum Reading High Probability Sequences producing High-scoring Segment Pairs: Frame Score P(N) N scf/ciona01/G126/seq_dir/hrs/G126P608287R.T0/G126P6082... +2 240 3.1e-19 1 scf/ciona01/G126/seq_dir/hrs/G126P609638F.T0/G126P6096... +1 205 1.9e-15 1 scf/ciona01/G126/seq_dir/hrs/G126P609562R.T0/G126P6095... -3 192 4.9e-14 1 scf/ciona01/G126/seq_dir/hrs/G126P609006F.T0/G126P6090... +2 173 2.8e-11 1 scf/ciona01/G126/seq_dir/hrs/G126P609474R.T0/G126P6094... +3 116 3.0e-08 2 scf/ciona01/G126/seq_dir/hrs/G126P609666F.T0/G126P6096... +3 148 7.9e-08 1 scf/ciona01/G126/seq_dir/hrs/G126P604525F.T0/G126P6045... -1 149 8.8e-08 1 scf/ciona01/G126/seq_dir/hrs/G126P609260F.T0/G126P6092... -1 102 3.2e-07 2 scf/ciona01/G126/seq_dir/hrs/G126P604496F.T0/G126P6044... +2 144 3.3e-07 1 scf/ciona01/G126/seq_dir/hrs/G126P609484R.T0/G126P6094... +2 135 7.4e-06 1 scf/ciona01/G126/seq_dir/hrs/G126P609871F.T0/G126P6098... -2 96 1.2e-05 2 scf/ciona01/G126/seq_dir/hrs/G126P606312F.T0/G126P6063... +2 131 1.2e-05 1 scf/ciona01/G126/seq_dir/hrs/G126P609751F.T0/G126P6097... +2 82 4.2e-05 3 scf/ciona01/G126/seq_dir/hrs/G126P609720F.T0/G126P6097... -2 84 5.0e-05 3 scf/ciona01/G126/seq_dir/hrs/G126P609519F.T0/G126P6095... +1 119 0.00031 1 scf/ciona01/G126/seq_dir/hrs/G126P609813F.T0/G126P6098... +3 116 0.00062 1 scf/ciona01/G126/seq_dir/hrs/G126P609144R.T0/G126P6091... +1 115 0.00079 1 scf/ciona01/G126/seq_dir/hrs/G126P609267R.T0/G126P6092... -2 110 0.0032 1 scf/ciona01/G126/seq_dir/hrs/G126P609171F.T0/G126P6091... +1 91 0.0036 2 scf/ciona01/G126/seq_dir/hrs/G126P608369F.T0/G126P6083... +2 108 0.0055 1 scf/ciona01/G126/seq_dir/hrs/G126P604877F.T0/G126P6048... -1 84 0.0064 2 scf/ciona01/G126/seq_dir/hrs/G126P609779R.T0/G126P6097... +1 104 0.015 1 scf/ciona01/G126/seq_dir/hrs/G126P609593F.T0/G126P6095... +3 102 0.024 1 scf/ciona01/G126/seq_dir/hrs/G126P609835R.T0/G126P6098... -1 102 0.024 1 scf/ciona01/G126/seq_dir/hrs/G126P609720R.T0/G126P6097... -2 98 0.066 1 scf/ciona01/G126/seq_dir/hrs/G126P609823R.T0/G126P6098... -3 98 0.072 1 scf/ciona01/G126/seq_dir/hrs/G126P609239R.T0/G126P6092... -3 96 0.11 1 scf/ciona01/G126/seq_dir/hrs/G126P609197R.T0/G126P6091... -3 95 0.14 1 scf/ciona01/G126/seq_dir/hrs/G126P609072R.T0/G126P6090... -2 92 0.29 1 scf/ciona01/G126/seq_dir/hrs/G126P608634R.T0/G126P6086... +3 91 0.36 1 scf/ciona01/G126/seq_dir/hrs/G126P609419F.T0/G126P6094... +3 86 0.43 2 scf/ciona01/G126/seq_dir/hrs/G126P609869F.T0/G126P6098... +2 73 0.60 2 scf/ciona01/G126/seq_dir/hrs/G126P609863F.T0/G126P6098... -3 87 0.71 1 scf/ciona01/G126/seq_dir/hrs/G126P606053F.T0/G126P6060... -3 87 0.71 1 scf/ciona01/G126/seq_dir/hrs/G126P606409R.T0/G126P6064... +1 84 0.93 1 scf/ciona01/G126/seq_dir/hrs/G126P606196R.T0/G126P6061... +1 82 0.99 1 scf/ciona01/G126/seq_dir/hrs/G126P609274R.T0/G126P6092... +2 81 0.997 1 scf/ciona01/G126/seq_dir/hrs/G126P605020R.T0/G126P6050... +3 81 0.997 1 scf/ciona01/G126/seq_dir/hrs/G126P606031F.T0/G126P6060... +1 81 0.997 1 >scf/ciona01/G126/seq_dir/hrs/G126P608287R.T0/G126P608287RA6.T0.seq 723 0 723 ABI Length = 723 Plus Strand HSPs: Score = 240 (84.5 bits), Expect = 3.1e-19, P = 3.1e-19 Identities = 50/173 (28%), Positives = 94/173 (54%), Frame = +2 Query: 328 FGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVGRDRLPCMGDQPNLPYVLAFLYE 387 FG + ++ + L + P+ + ++ AE +V G D + + ++PY A +YE Sbjct: 5 FGRLKTSMLVXILDLSYFLLKTPNSK-QMAAEFIKVTGNDVIN-VSMMESMPYTRAVMYE 178 Query: 388 AMRFSSFVPVTIPHATTANTSVLGYHIPKDTVVFVNQWSVNHDPVKWPNPENFDPARFLD 447 + R P+++ H T++ +V IPK T+V N W++ +DP W NPE+F P R + Sbjct: 179 STRMRPVFPLSLGHQATSDVTVKDNVIPKGTLVVANLWAIQNDPKWWKNPESFRPERHIT 358 Query: 448 KDGLINKDLTSRVMIFSVGKRRCIGEELSKMQLFLFISILAHQCDFRANPNEP 500 ++G K+ +++ FS+G R C+G +++ F+F++ L FR + N+P Sbjct: 359 ENGGFTKN--EKIVPFSIGPRFCLGSQMATYHQFIFLANLVRTFKFRFHENQP 511 >scf/ciona01/G126/seq_dir/hrs/G126P609638F.T0/G126P609638FH3.T0.seq 726 0 726 ABI Length = 726 Plus Strand HSPs: Score = 205 (72.2 bits), Expect = 1.9e-15, P = 1.9e-15 Identities = 53/188 (28%), Positives = 89/188 (47%), Frame = +1 Query: 312 GARLDLENVPATITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVGRDRLPC 371 G L L ++ + DT + A+ W + L R+P +Q R+ ELD V G D Sbjct: 100 GRSLSLSDIQEEVDTFMFEGHDTTAAAMTWTIYLIGRHPAIQARIHEELDDVFGGDMGTI 279 Query: 372 MGDQ-PNLPYVLAFLYEAMRFSSFVPVTIPHATTANTSVLGYHIPKDTVVFVNQWSVNHD 430 L + + E++R VP I TT SV + IP T V + S++H+ Sbjct: 280 TNSHLQKLSLLERTIKESLRMFPSVPF-IGRVTTEECSVGSHSIPAGTQVAIFIDSLHHN 456 Query: 431 PVKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCIGEELSKMQLFLFISILAHQ 490 P WP+ + FDP RFL ++ + + S + FS G R CIG++ + M+ + ++ + + Sbjct: 457 PSVWPDVDRFDPDRFLPEN-CVGRHPYSFIP-FSAGPRNCIGQKFALMEEKVLLTQILRK 630 Query: 491 CDFRANPNE 499 ++ E Sbjct: 631 YSIHSHDEE 657 >scf/ciona01/G126/seq_dir/hrs/G126P609562R.T0/G126P609562RB8.T0.seq 731 0 731 ABI Length = 731 Minus Strand HSPs: Score = 192 (67.6 bits), Expect = 4.9e-14, P = 4.9e-14 Identities = 37/104 (35%), Positives = 59/104 (56%), Frame = -3 Query: 420 VFVNQWSVNHDPVKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCIGEELSKMQ 479 + N W V++DPV WPNP FDP R +D G +S+V+ FS+G R C+GE L++ + Sbjct: 507 ILSNLWGVHNDPVTWPNPSKFDPHRHIDDQGKYRN--SSKVIPFSIGPRSCLGEALARQE 334 Query: 480 LFLFISILAHQCDFRANPNEPAKMNFSYG-LTIKPKSFKVNVTLR 523 +F+F+ + + + P +P LT P +FK+ +T R Sbjct: 333 MFIFLIAILQKYEINPVPGKPLPSLVGINSLTYTPANFKLILTER 199 >scf/ciona01/G126/seq_dir/hrs/G126P609006F.T0/G126P609006FH8.T0.seq 722 0 722 ABI Length = 722 Plus Strand HSPs: Score = 173 (60.9 bits), Expect = 2.8e-11, P = 2.8e-11 Identities = 36/100 (36%), Positives = 58/100 (58%), Frame = +2 Query: 430 DPVKWPNPENFDPARFLDKDGL-INKDLTSRVMIFSVGKRRCIGEELSKMQLFLFISILA 488 DP W NP+ FDP FL++DG + + +++ + GKRRC G ELS+ ++F+F++ L Sbjct: 95 DPKIWKNPDEFDPGHFLEEDGSKLRSEAVHKLLSWGAGKRRCPGAELSRHEIFVFVTTLV 274 Query: 489 HQCDF--RANPNEPA-KMNFSYGLTIKPKSFKVNVTLRES 525 + + EPA N + G++I P F+V +T R S Sbjct: 275 RRAYIGQAVDGVEPAFPWNTTGGISISPDPFRVKITERPS 394 >scf/ciona01/G126/seq_dir/hrs/G126P609474R.T0/G126P609474RE4.T0.seq 735 0 735 ABI Length = 735 Plus Strand HSPs: Score = 116 (40.8 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08 Identities = 23/55 (41%), Positives = 35/55 (63%), Frame = +3 Query: 368 RLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTIPHATTANTSVLGYHIPKDTVVFV 422 +LP + + NLP + AF+ E R + +P+ + H T A+ + GYHIPK+TVV V Sbjct: 495 KLPSVDHKENLPKLQAFIQEIYRNLTLLPLGLQHKTMADVELCGYHIPKNTVVRV 659 Score = 81 (28.5 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08 Identities = 14/43 (32%), Positives = 25/43 (58%), Frame = +1 Query: 324 ITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVGR 366 + D+F A +T +T L W L + YPD+Q+ + E+ + G+ Sbjct: 310 VADLFLAGTETSTTTLMWCLAVLLNYPDLQSVLYEEISRETGK 438 >scf/ciona01/G126/seq_dir/hrs/G126P609666F.T0/G126P609666FD10.T0.seq 688 0 688 ABI Length = 688 Plus Strand HSPs: Score = 148 (52.1 bits), Expect = 7.9e-08, P = 7.9e-08 Identities = 37/101 (36%), Positives = 62/101 (61%), Frame = +3 Query: 424 QWSVNHDPVKWPNPENFDPARFLDKDGLINKDLTSRVMI-FSVGKRRCIGEELSKMQLFL 482 +++V++DPV WP P FD R +DKDG K + S+ +I F VG R C+G++L+++++F+ Sbjct: 15 EFAVHNDPVIWPEPSKFDIYRHIDKDG---KFIHSKKVIPFGVGARVCLGKKLAQLEVFI 185 Query: 483 FISILAHQCDFRANP--NE-PAKMNFSYGLTIKPKSFKVNVTLR 523 F++ + + + +P NE P + G P FKV V R Sbjct: 186 FLANIIKKFEIIPDPETNEIPPIHDGLSGAGFFPYPFKVIVKSR 317 >scf/ciona01/G126/seq_dir/hrs/G126P604525F.T0/G126P604525FB8.T0.seq 729 0 729 ABI Length = 729 Minus Strand HSPs: Score = 149 (52.5 bits), Expect = 8.8e-08, P = 8.8e-08 Identities = 44/144 (30%), Positives = 71/144 (49%), Frame = -1 Query: 383 AFLYEAMRFSSFV-P---VTIP---HATTANTSVLGYHIPKDTVVFVNQWSVNHDPVKWP 435 ++LY ++F F+ P +P HA ++ P V +N W V++DP + Sbjct: 519 SYLYFNLKFPFFILPSFFCYMPFKGHAIYVALNIPQPFFPHLFKVCINLWGVHNDPCLFD 340 Query: 436 NPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCIGEELSKMQLFLFISILAHQCDFRA 495 P F P R L +DG + + V+ FSVG R C+G +++ M LF + L +F Sbjct: 339 EPGEFRPERHLYEDGKFGR--SDYVIPFSVGPRHCLGHQVASMILFSHLVNLMRNFEFLP 166 Query: 496 NP---NEPAKMNFSYGLTIKPKSFKV 518 +P N P N S G+ P++FK+ Sbjct: 165 DPTAPNLPDITNGSSGILFLPRNFKL 88 >scf/ciona01/G126/seq_dir/hrs/G126P609260F.T0/G126P609260FA10.T0.seq 733 0 733 ABI Length = 733 Minus Strand HSPs: Score = 102 (35.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07 Identities = 20/44 (45%), Positives = 26/44 (59%), Frame = -1 Query: 377 NLPYVLAFLYEAMRFSSFVPVTIPHATTANTSVLGYHIPKDTVV 420 NLPY A L E R + P+ IP T + +++GY IPKDT V Sbjct: 226 NLPYTKAVLQETYRIRTATPLAIPRRTREDVNLMGYSIPKDTQV 95 Score = 87 (30.6 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07 Identities = 15/45 (33%), Positives = 27/45 (60%), Frame = -1 Query: 324 ITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVGRDR 368 + DIF A +T ++ + W L R+P++Q +V E+D +G+ R Sbjct: 652 LKDIFAAGTETSTSTIIWALYYLIRHPEIQDKVHREIDAELGKAR 518 >scf/ciona01/G126/seq_dir/hrs/G126P604496F.T0/G126P604496FE1.T0.seq 724 0 724 ABI Length = 724 Plus Strand HSPs: Score = 144 (50.7 bits), Expect = 3.3e-07, P = 3.3e-07 Identities = 35/107 (32%), Positives = 60/107 (56%), Frame = +2 Query: 420 VFVNQWSVNHDPVKWPNPENFDPARFLDKDGLINKDLTSRVMI-FSVGKRRCIGEELSKM 478 +F N +V+ D W +P FD R +DK+G K + S+ +I F +G R CIGE+L++ Sbjct: 359 IFTNLHAVHSDSKTWEDPYKFDIYRHIDKNG---KFVASKKVIPFGIGARSCIGEKLAQT 529 Query: 479 QLFLFISILAHQCDFR--ANPNEPAKMNFSY-GLTIKPKSFKVNVTLRES 525 +++LF++ + + + + P +N G P SFKV + +R S Sbjct: 530 EIYLFLANIIKRFEILPDSGSKHPPPLNDGVTGFAFTPFSFKVVLKIRNS 679 >scf/ciona01/G126/seq_dir/hrs/G126P609484R.T0/G126P609484RG2.T0.seq 992 0 992 ABI Length = 992 Plus Strand HSPs: Score = 135 (47.5 bits), Expect = 7.4e-06, P = 7.4e-06 Identities = 31/115 (26%), Positives = 59/115 (51%), Frame = +2 Query: 420 VFVNQWSVNHDPVKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCIGEELSKMQ 479 + N ++ +HDP W +P +F+ R +DKDG + +V+ F +G R C+GE+L +++ Sbjct: 134 ILTNLYAAHHDPKTWKDPSSFNIYRHIDKDGKFVP--SKKVISFGIGARSCLGEKLGRIE 307 Query: 480 LFLFISILAHQCDFRANPNEPAKMNFSYGLT---IKPKSFKVNVTLRESMELLDSAV 533 + LF++ + + +P + G+ P FKV + R + D A+ Sbjct: 308 ICLFLANIIKTFEILPDPKSNRLPSIDRGIAGFLYIPYPFKVVMKSRI*DWICDGAI 478 >scf/ciona01/G126/seq_dir/hrs/G126P609871F.T0/G126P609871FD8.T0.seq 760 0 760 ABI Length = 760 Minus Strand HSPs: Score = 96 (33.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05 Identities = 17/55 (30%), Positives = 32/55 (58%), Frame = -2 Query: 360 LDQVVGRDRLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTIPHATTANTSVLG-YH 413 L G+++ P M ++P +PY AF+ E R+ + VP+ + H T + ++ G +H Sbjct: 186 LSCTTGQEKTPAMENKPIMPYTCAFMQEVYRYRTLVPLNLTHMTNNDVNLNGEFH 22 Score = 79 (27.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05 Identities = 13/42 (30%), Positives = 28/42 (66%), Frame = -1 Query: 324 ITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVG 365 + D+F A +T ++ L+W LL +P++Q +++ E+ +V+G Sbjct: 361 VRDLFIAGTETTTSTLRWSLLCLIHHPEIQEKLRKEILKVLG 236 >scf/ciona01/G126/seq_dir/hrs/G126P606312F.T0/G126P606312FA6.T0.seq 734 0 734 ABI Length = 734 Plus Strand HSPs: Score = 131 (46.1 bits), Expect = 1.2e-05, P = 1.2e-05 Identities = 31/85 (36%), Positives = 48/85 (56%), Frame = +2 Query: 442 PARFLDKDGLINKDLTSRVMIFSVGKRRCIGEELSKMQLFLFISILAHQCDFRANPNEPA 501 P R LD +G K +++VM F++G R C+G++L+ M+LFL L H+ FR P E Sbjct: 41 P*RHLDANGNFVK--SNKVMQFNIGLRSCLGQQLANMELFLVTVSLFHRLSFRLKPGEKV 214 Query: 502 KMNFSYGLTIKPKSFKVNVTLRESM 526 M ++++P F NV L + M Sbjct: 215 DMAGESVISLRP--FSYNVILEKRM 283 >scf/ciona01/G126/seq_dir/hrs/G126P609751F.T0/G126P609751FH8.T0.seq 756 0 756 ABI Length = 756 Plus Strand HSPs: Score = 82 (28.9 bits), Expect = 4.2e-05, Sum P(3) = 4.2e-05 Identities = 16/54 (29%), Positives = 30/54 (55%), Frame = +2 Query: 367 DRLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTIPHATTANTSVLGYHIPKDTVV 420 ++ P + + LP + AF+ E +R S P+++ H + + + G IPK T+V Sbjct: 518 EKPPAVEHRQELPLLQAFIQEILRCFSIAPLSLQHKASEDVEIGGCFIPKHTLV 679 Score = 77 (27.1 bits), Expect = 4.2e-05, Sum P(3) = 4.2e-05 Identities = 13/42 (30%), Positives = 23/42 (54%), Frame = +1 Query: 324 ITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVG 365 + D+F A DT S + W + + +PD+QT++ E+ G Sbjct: 322 VADLFLAGTDTSSNTISWAVSVLLHFPDLQTKLFEEISSKTG 447 Score = 48 (16.9 bits), Expect = 4.2e-05, Sum P(3) = 4.2e-05 Identities = 12/41 (29%), Positives = 20/41 (48%), Frame = +1 Query: 268 FSNFILDKFLRHCESLRPGAAPRDMMDAFILSAEKKAAGDS 308 F+ F + H +L P D +DAF++ +K + DS Sbjct: 91 FAEFCRAQIEEHQRNLDENE-PTDFIDAFLIEMKKHSPEDS 210 >scf/ciona01/G126/seq_dir/hrs/G126P609720F.T0/G126P609720FH4.T0.seq 720 0 720 ABI Length = 720 Minus Strand HSPs: Score = 84 (29.6 bits), Expect = 5.0e-05, Sum P(3) = 5.0e-05 Identities = 14/42 (33%), Positives = 24/42 (57%), Frame = -2 Query: 324 ITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVG 365 + D+F A DT S + W + + YPD+QT++ E+ + G Sbjct: 386 VADLFLAGTDTSSNTISWAVSVLLHYPDLQTKLYEEISKKTG 261 Score = 73 (25.7 bits), Expect = 5.0e-05, Sum P(3) = 5.0e-05 Identities = 14/49 (28%), Positives = 26/49 (53%), Frame = -3 Query: 367 DRLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTIPHATTANTSVLGYHIP 415 ++ P + LP + AF+ E +R + P+++ H T+A + G IP Sbjct: 193 EKPPAFEHRQELPLLQAFIQEILRCFTIAPLSLQHKTSAEVEIGGCFIP 47 Score = 48 (16.9 bits), Expect = 5.0e-05, Sum P(3) = 5.0e-05 Identities = 12/41 (29%), Positives = 20/41 (48%), Frame = -3 Query: 268 FSNFILDKFLRHCESLRPGAAPRDMMDAFILSAEKKAAGDS 308 F+ F + H +L P D +DAF++ +K + DS Sbjct: 616 FAEFCRAQIEEHQRNLDENE-PTDFIDAFLIEMKKHSPEDS 497 >scf/ciona01/G126/seq_dir/hrs/G126P609519F.T0/G126P609519FB6.T0.seq 750 0 750 ABI Length = 750 Plus Strand HSPs: Score = 119 (41.9 bits), Expect = 0.00031, P = 0.00031 Identities = 25/81 (30%), Positives = 43/81 (53%), Frame = +1 Query: 28 SVLATVHVGQRLLRQRRRQLRSAPPGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQI 87 SVL + + R +++ ++ PPGP P+ G + A L+F + +++YG +F + Sbjct: 61 SVLVVLLAVMMIYRWHKQKDKNLPPGPTGVPIFGCLPFMDTLAELTFTKWSKKYGPIFTV 240 Query: 88 RLGSCPIVVLNGERAIHQALV 108 LG +VVLN AI + V Sbjct: 241 YLGQTRVVVLNSYEAIEEVQV 303 >scf/ciona01/G126/seq_dir/hrs/G126P609813F.T0/G126P609813FF12.T0.seq 720 0 720 ABI Length = 720 Plus Strand HSPs: Score = 116 (40.8 bits), Expect = 0.00062, P = 0.00062 Identities = 22/57 (38%), Positives = 34/57 (59%), Frame = +3 Query: 365 GRDRLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTIPHATTANTSVLGYHIPKDTVVF 421 G LP + + NLP + AF+ E R+ + P++I H T+ + + GY IPKDT V+ Sbjct: 354 GEHVLPSVDHKDNLPLLRAFIQEVYRYQTIKPLSIKHRTSEDVEIGGYFIPKDTTVW 524 >scf/ciona01/G126/seq_dir/hrs/G126P609144R.T0/G126P609144RG7.T0.seq 704 0 704 ABI Length = 704 Plus Strand HSPs: Score = 115 (40.5 bits), Expect = 0.00079, P = 0.00079 Identities = 28/88 (31%), Positives = 41/88 (46%), Frame = +1 Query: 399 IPHATTANTSVLGYHIPKDTVVFVNQWSVNHDPVKWPNPENFDPARFLDKDGLINKDLTS 458 IP + + V GY IPK T + S++ DP W NP FDP FL+ DG + + Sbjct: 43 IP-CSKEDPKVAGYEIPKGTSIMPCYHSIHFDPKFWKNPNQFDPTNFLENDGKVG----T 207 Query: 459 RVMIFSVGKRRCIGEELSKMQLFLFISI 486 R G + K+++FL + I Sbjct: 208 RTAFMPFGGGNLLNLN*IKLKIFLGLFI 291 >scf/ciona01/G126/seq_dir/hrs/G126P609267R.T0/G126P609267RD8.T0.seq 740 0 740 ABI Length = 740 Minus Strand HSPs: Score = 110 (38.7 bits), Expect = 0.0032, P = 0.0032 Identities = 23/47 (48%), Positives = 29/47 (61%), Frame = -2 Query: 107 LVQQGSAFADRPAFASFRVVSGGRSMAFGHYSEHWKVQRRAAHSMMR 153 LV+QG+AF+ RP+ VS G M F +Y EHWK QRR S +R Sbjct: 535 LVKQGTAFSGRPSIDIIERVSKGNGMIFLNYDEHWKKQRRFGLSTLR 395 >scf/ciona01/G126/seq_dir/hrs/G126P609171F.T0/G126P609171FA10.T0.seq 758 0 758 ABI Length = 758 Plus Strand HSPs: Score = 91 (32.0 bits), Expect = 0.0036, Sum P(2) = 0.0036 Identities = 23/84 (27%), Positives = 41/84 (48%), Frame = +1 Query: 365 GRDRLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTIPHATTANTSVLGYHIPKDTVVFVNQ 424 G + +P + +P+ AF+ E+MR+ + VP+ H + + Y IPK T V++ + Sbjct: 454 GSNGIPSSTLREKMPFTCAFIQESMRYCTVVPMGSQHYCQEDLKINEYTIPKGTTVWLTK 633 Query: 425 WSVNHDPVKWPNPENFDPARFLDK 448 +N + + N FLDK Sbjct: 634 TLINTNRSVYVFDRN-T*KEFLDK 702 Score = 60 (21.1 bits), Expect = 0.0036, Sum P(2) = 0.0036 Identities = 11/43 (25%), Positives = 22/43 (51%), Frame = +2 Query: 324 ITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVGR 366 I D+ A ++ S +L W ++ +PD + E+D +G+ Sbjct: 275 IQDMMFAGSESTSNSLLWCFVILLHHPDHAKTLVNEIDMAMGK 403 >scf/ciona01/G126/seq_dir/hrs/G126P608369F.T0/G126P608369FA5.T0.seq 759 0 759 ABI Length = 759 Plus Strand HSPs: Score = 108 (38.0 bits), Expect = 0.0055, P = 0.0055 Identities = 29/114 (25%), Positives = 56/114 (49%), Frame = +2 Query: 8 NDPWPLNPLSIQQTTLLLLLSVLATVHVGQRLLRQRRRQLRSAPPGPFAWPLIGNAAAVG 67 N P++ +S ++ LL VL + + R+ R+ PPG PL+G +G Sbjct: 194 NQQ*PVSFISEY*KLIMFLLFVLGCFILALLFWKPIRKP-RNYPPGFDGVPLLGCLPFLG 370 Query: 68 QAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQGSAFADRPAFA 121 + ++ YGDVF ++ + +V++N +AI + +++QG F+ F+ Sbjct: 371 PQPAKTIMEWSKTYGDVFYVKYATQNVVMINSLQAIKETMIKQGHIFSGMTCFS 532 >scf/ciona01/G126/seq_dir/hrs/G126P604877F.T0/G126P604877FA5.T0.seq 730 0 730 ABI Length = 730 Minus Strand HSPs: Score = 84 (29.6 bits), Expect = 0.0064, Sum P(2) = 0.0064 Identities = 17/50 (34%), Positives = 27/50 (54%), Frame = -1 Query: 106 ALVQQGSAFADRPAFASFRVVSGGRSMAFGHYSEHWKVQRRAAHSMMRNF 155 ALV QG++F+ RP A+ ++ G + Y + WK QR S +R + Sbjct: 484 ALVNQGNSFSGRPLIATLDQITEGHGIVLLDYGDWWKRQRSFGFSTLRGW 335 Score = 65 (22.9 bits), Expect = 0.0064, Sum P(2) = 0.0064 Identities = 15/53 (28%), Positives = 24/53 (45%), Frame = -2 Query: 53 GPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQ 105 GP P +G +G A + + +++YG V +R+G V L I Q Sbjct: 705 GPRGIPFLGVLPFLGNYAERTMHKWSKKYGPVMSVRMGRQDWVFLGDHETIRQ 547 >scf/ciona01/G126/seq_dir/hrs/G126P609779R.T0/G126P609779RD3.T0.seq 728 0 728 ABI Length = 728 Plus Strand HSPs: Score = 104 (36.6 bits), Expect = 0.015, P = 0.015 Identities = 19/50 (38%), Positives = 33/50 (66%), Frame = +1 Query: 104 HQALVQQGSAFADRPAFASFRVVSGGRSMAFGHYSEHWKVQRRAAHSMMR 153 ++ LV+QG+AF+ RP+ ++ ++ G + F Y++HWK QRR S +R Sbjct: 382 NRGLVKQGNAFSGRPSISTIDQITEGHGVLFIDYNDHWKRQRRFGLSTLR 531 >scf/ciona01/G126/seq_dir/hrs/G126P609593F.T0/G126P609593FD6.T0.seq 715 0 715 ABI Length = 715 Plus Strand HSPs: Score = 102 (35.9 bits), Expect = 0.024, P = 0.024 Identities = 26/106 (24%), Positives = 53/106 (50%), Frame = +3 Query: 426 SVNHDPVKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCIGEELSKMQLFLFIS 485 +++ D + NP+ F+ R ++ +++ F +G R C+GE+L+ +++F+F++ Sbjct: 384 AIHQDENLFKNPKEFNIYRHIEGGKFF---FNKKIIPFGIGARSCLGEKLANLEIFIFLA 554 Query: 486 ILAHQCDFRANPNE---PAKMNFSYGLTIKPKSFKVNVTLRESMELLDS 531 + + + +P P N GL P FK+ R LLD+ Sbjct: 555 NIIRRFEILPDPKSKCLPPFKNGIRGLLYVPFPFKMVAKPRLVNRLLDT 701 >scf/ciona01/G126/seq_dir/hrs/G126P609835R.T0/G126P609835RC10.T0.seq 720 0 720 ABI Length = 720 Minus Strand HSPs: Score = 102 (35.9 bits), Expect = 0.025, P = 0.024 Identities = 17/41 (41%), Positives = 29/41 (70%), Frame = -1 Query: 324 ITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVV 364 + D+FGA+ DT++ AL W+++ ++ Y QTR Q E+D+ V Sbjct: 246 VGDLFGANVDTMTVALAWMIVYWSTYHQAQTRAQEEIDRFV 124 >scf/ciona01/G126/seq_dir/hrs/G126P609720R.T0/G126P609720RF11.T0.seq 700 0 700 ABI Length = 700 Minus Strand HSPs: Score = 98 (34.5 bits), Expect = 0.068, P = 0.066 Identities = 23/69 (33%), Positives = 41/69 (59%), Frame = -2 Query: 454 KDLTSRVMI-FSVGKRRCIGEELSKMQLFLFISILAHQCDFRANPNE---PAKMNFSYGL 509 K ++SR +I F +G R CIGE++++M++FLF+S + + +P + P N + + Sbjct: 675 KFISSRKVIPFGIGARSCIGEKMARMEIFLFVSNIIKAFEILPDPLKKLHPPLENMAGSV 496 Query: 510 TIKPKSFKV 518 P+ FKV Sbjct: 495 LHVPEKFKV 469 >scf/ciona01/G126/seq_dir/hrs/G126P609823R.T0/G126P609823RD3.T0.seq 757 0 757 ABI Length = 757 Minus Strand HSPs: Score = 98 (34.5 bits), Expect = 0.074, P = 0.072 Identities = 26/82 (31%), Positives = 42/82 (51%), Frame = -3 Query: 340 QWLLLLFTRYPDVQTRVQAELDQVVGRDRLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTI 399 QW+ L Y + Q R L+ +G D +P + +P+ AF+ E++R+ + VP+ Sbjct: 383 QWVRLY---Y*EPQQR*LLLLN--LGADGIPSSKLREKMPFTCAFIQESVRYFTVVPMGS 219 Query: 400 PHATTANTSVLGYHIPKDTVVF 421 H N + GY IPK T V+ Sbjct: 218 QHYCQENIKIHGYTIPKGTTVW 153 >scf/ciona01/G126/seq_dir/hrs/G126P609239R.T0/G126P609239RG10.T0.seq 740 0 740 ABI Length = 740 Minus Strand HSPs: Score = 96 (33.8 bits), Expect = 0.12, P = 0.11 Identities = 17/43 (39%), Positives = 28/43 (65%), Frame = -3 Query: 325 TDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVGRD 367 TD+F +TL++ L+W L +P+ QTRV+ E+D V+G + Sbjct: 354 TDLFIGGTETLTSQLRWGFLTMALHPEYQTRVRCEIDDVIGEN 226 >scf/ciona01/G126/seq_dir/hrs/G126P609197R.T0/G126P609197RD11.T0.seq 728 0 728 ABI Length = 728 Minus Strand HSPs: Score = 95 (33.4 bits), Expect = 0.16, P = 0.14 Identities = 18/44 (40%), Positives = 29/44 (65%), Frame = -3 Query: 324 ITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELD-QVVGR 366 + ++F DT +TAL+W LLL YP++ +++AE+D V GR Sbjct: 174 VKELFLGGTDTTATALRWALLLIHTYPEIAKKLKAEIDTNVTGR 43 >scf/ciona01/G126/seq_dir/hrs/G126P609072R.T0/G126P609072RB2.T0.seq 748 0 748 ABI Length = 748 Minus Strand HSPs: Score = 92 (32.4 bits), Expect = 0.35, P = 0.29 Identities = 17/72 (23%), Positives = 41/72 (56%), Frame = -2 Query: 426 SVNHDPVKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCIGEELSKMQLFLFIS 485 +V+ D + NP+ F+ R ++ +++ F +G R C+GE+L+++++FLF++ Sbjct: 285 AVHQDEKLFKNPKEFNIYRHIEGGKFF---FNKKIIPFGIGARSCLGEKLARLEVFLFLA 115 Query: 486 ILAHQCDFRANP 497 + + + +P Sbjct: 114 NIIRRFEILPDP 79 >scf/ciona01/G126/seq_dir/hrs/G126P608634R.T0/G126P608634RG7.T0.seq 738 0 738 ABI Length = 738 Plus Strand HSPs: Score = 91 (32.0 bits), Expect = 0.44, P = 0.36 Identities = 14/28 (50%), Positives = 22/28 (78%), Frame = +3 Query: 220 EFRELLSHNEEFGRTVGAGSLVDVMPWL 247 +FR+LLS N+EFG+ + G ++D MPW+ Sbjct: 246 DFRKLLSMNKEFGKVIELGPIIDAMPWI 329 >scf/ciona01/G126/seq_dir/hrs/G126P609419F.T0/G126P609419FE10.T0.seq 706 0 706 ABI Length = 706 Plus Strand HSPs: Score = 86 (30.3 bits), Expect = 0.56, Sum P(2) = 0.43 Identities = 15/47 (31%), Positives = 28/47 (59%), Frame = +3 Query: 323 TITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVGRDRL 369 +I+D+F A +T +T L W ++ +PD+Q + EL Q +G + + Sbjct: 117 SISDLFIAGTETTTTTLLWCMIAMLHFPDIQALIYNELMQEIGSNMI 257 Score = 43 (15.1 bits), Expect = 0.56, Sum P(2) = 0.43 Identities = 8/12 (66%), Positives = 9/12 (75%), Frame = +1 Query: 409 VLGYHIPKDTVV 420 + GY IPKDT V Sbjct: 598 IKGYRIPKDTKV 633 >scf/ciona01/G126/seq_dir/hrs/G126P609869F.T0/G126P609869FC12.T0.seq 679 0 679 ABI Length = 679 Plus Strand HSPs: Score = 73 (25.7 bits), Expect = 0.91, Sum P(2) = 0.60 Identities = 14/46 (30%), Positives = 25/46 (54%), Frame = +2 Query: 110 QGSAFADRPAFASFRVVSGGRSMAFGHYSEHWKVQRRAAHSMMRNF 155 QG++F+ RP A+ ++ GR + Y + WK +R S +R + Sbjct: 266 QGNSFSGRPLIAALDQITEGRGIVLLDYGDWWKRRRSFGFSTLRGW 403 Score = 55 (19.4 bits), Expect = 0.91, Sum P(2) = 0.60 Identities = 12/43 (27%), Positives = 23/43 (53%), Frame = +3 Query: 48 RSAPPGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLG 90 ++ P GP P +G +G A + + +++YG V +R+G Sbjct: 18 QNMPWGPRI-PFLGVLPFLGNYAERTMHKWSKKYGPVMSVRMG 143 >scf/ciona01/G126/seq_dir/hrs/G126P609863F.T0/G126P609863FA11.T0.seq 731 0 731 ABI Length = 731 Minus Strand HSPs: Score = 87 (30.6 bits), Expect = 1.2, P = 0.71 Identities = 15/48 (31%), Positives = 28/48 (58%), Frame = -3 Query: 52 PGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLNG 99 P P P+IGN + + H+ + A+ +GD+F+I++G +V+ G Sbjct: 660 PSPRGLPIIGNVHQLTTSPHVKLSEWAKEFGDLFRIKMGCFDTLVVTG 517 >scf/ciona01/G126/seq_dir/hrs/G126P606053F.T0/G126P606053FE1.T0.seq 731 0 731 ABI Length = 731 Minus Strand HSPs: Score = 87 (30.6 bits), Expect = 1.2, P = 0.71 Identities = 17/57 (29%), Positives = 27/57 (47%), Frame = -3 Query: 312 GARLDLENVPATITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVGRDR 368 G L L ++ + DT + A+ W + R+P++Q +V ELD V DR Sbjct: 252 GKTLSLNDIQEEVDTFMFEGHDTTAAAMTWAIYALGRHPEIQKKVHEELDSVFEDDR 82 >scf/ciona01/G126/seq_dir/hrs/G126P606409R.T0/G126P606409RF5.T0.seq 707 0 707 ABI Length = 707 Plus Strand HSPs: Score = 84 (29.6 bits), Expect = 2.6, P = 0.93 Identities = 15/45 (33%), Positives = 27/45 (60%), Frame = +1 Query: 324 ITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVGRDR 368 + DIF A +T ++ + W L R+P++Q +V E+D +G+ R Sbjct: 502 LKDIFVAGTETSTSTIIWALYYLIRHPEIQDKVHREIDAELGKAR 636 >scf/ciona01/G126/seq_dir/hrs/G126P606196R.T0/G126P606196RA2.T0.seq 716 0 716 ABI Length = 716 Plus Strand HSPs: Score = 82 (28.9 bits), Expect = 4.4, P = 0.99 Identities = 14/46 (30%), Positives = 27/46 (58%), Frame = +1 Query: 324 ITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVGRDRL 369 + D+F A +T ++ +W LL YP+ Q +++ E V+G+ +L Sbjct: 457 LRDLFEAGSETTTSTTRWALLCMLHYPETQDKLREETMNVIGK*KL 594 >scf/ciona01/G126/seq_dir/hrs/G126P609274R.T0/G126P609274RB9.T0.seq 717 0 717 ABI Length = 717 Plus Strand HSPs: Score = 81 (28.5 bits), Expect = 5.7, P = 1.00 Identities = 16/41 (39%), Positives = 24/41 (58%), Frame = +2 Query: 106 ALVQQGSAFADRPAFASFRVVSGGRSMAFGHYSEHWKVQRR 146 ALV+Q + F+ RP + ++ GR +AF Y WK QR+ Sbjct: 191 ALVKQSNVFSGRPHVPTLHHITQGRGLAFVDYGPVWKSQRK 313 >scf/ciona01/G126/seq_dir/hrs/G126P605020R.T0/G126P605020RH2.T0.seq 732 0 732 ABI Length = 732 Plus Strand HSPs: Score = 81 (28.5 bits), Expect = 5.8, P = 1.00 Identities = 18/61 (29%), Positives = 28/61 (45%), Frame = +3 Query: 45 RQLRSAPPGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIH 104 R+ ++ PPGP P +G +G + + +YG V +R+G VVL I Sbjct: 84 RRPKNFPPGPRGIPFLGVLPFLGNYPERKMRKWSNKYGPVMSVRMGRQDWVVLGDHETIQ 263 Query: 105 Q 105 Q Sbjct: 264 Q 266 >scf/ciona01/G126/seq_dir/hrs/G126P606031F.T0/G126P606031FF10.T0.seq 734 0 734 ABI Length = 734 Plus Strand HSPs: Score = 81 (28.5 bits), Expect = 5.8, P = 1.00 Identities = 22/87 (25%), Positives = 41/87 (47%), Frame = +1 Query: 21 TTLLLLLSVLATVHVGQRLLRQRRRQLRSAPPGPFAWPLIGNAAAVGQAAHLSFARLARR 80 T L+ +++ + + LLR ++ + PPGP P +G + F + +++ Sbjct: 40 TLELVFVAICVAIAI---LLRNWLKRPSNYPPGPLGIPGLGVIPFLSTFPQREFLKWSKK 210 Query: 81 YGDVFQIRLGSCPIVVLNGERAIHQAL 107 YG +F R G VVLN ++ Q + Sbjct: 211 YGPMFSARFGLQKWVVLNDYDSVVQVI 291 Parameters: ctxfactor=6.00 E=10 Query ----- As Used ----- ----- Computed ---- Frame MatID Matrix name Lambda K H Lambda K H +0 0 BLOSUM62 0.323 0.137 0.417 same same same Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a Query Frame MatID Length Eff.Length E S W T X E2 S2 +0 0 543 543 10. 74 3 13 22 0.064 37 35 0.063 42 Statistics: Database: /seqs/databases/ciona/ciona_23.seq Title: /seqs/databases/ciona/ciona_23.seq Release date: unknown Posted date: 3:07 AM CST Mar 31, 2002 Format: BLAST # of letters in database: 78,002,675 # of sequences in database: 100,000 # of database sequences satisfying E: 39 No. of states in DFA: 545 (58 KB) Total size of DFA: 104 KB (128 KB) Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00 No. of threads or processors used: 2 Search cpu time: 13.56u 0.15s 13.71t Elapsed: 00:00:20 Total cpu time: 13.58u 0.17s 13.75t Elapsed: 00:00:20 Start: Mon Apr 1 21:57:24 2002 End: Mon Apr 1 21:57:44 2002